Contents Menu Expand Light mode Dark mode Auto light/dark mode
Esrum Cluster documentation
Esrum Cluster documentation

Contents:

  • 1. Contact
  • 2. Overview
  • 3. Guidelines
  • 4. Using the cluster
    • 4.1. Accessing the cluster
      • 4.1.1. Applying for access
      • 4.1.2. Connecting to the cluster
    • 4.2. Projects, data, and home folders
    • 4.3. Running jobs using Slurm
      • 4.3.1. Basic Slurm jobs
      • 4.3.2. Advanced Slurm jobs
      • 4.3.3. Using the GPU/hi-MEM node
    • 4.4. Environment modules
    • 4.5. Transferring data
  • 5. Other services
    • 5.1. R
    • 5.2. RStudio
    • 5.3. Jupyter notebook
    • 5.4. Running containerized software
    • 5.5. Public and private Shiny servers
  • 6. Tips and tricks
    • 6.1. Creating environment modules
    • 6.2. Persistent sessions with tmux
    • 6.3. Batching commands outside Slurm
    • 6.4. Writing robust bash scripts
  • 7. Troubleshooting
  • 8. Communications
    • 8.1. Welcome to CBMRs Compute Cluster Esrum!
    • 8.2. Workshops and other presentations
Back to top
Copyright © 2023-2024, CBMR Data Analytics; licensed under CC-BY 4.0
Made with Sphinx and @pradyunsg's Furo